Master's Dissertation
DOI
https://doi.org/10.11606/D.91.2005.tde-06012006-134726
Document
Author
Full name
Miriam Gonçalves de Chaves
E-mail
Institute/School/College
Knowledge Area
Date of Defense
Published
Piracicaba, 2005
Supervisor
Committee
Mui, Tsai Siu (President)
Durrant, Lucia Regina
Monteiro, Regina Teresa Rosim
Title in Portuguese
Crescimento e sobrevivência do recombinante Rhodococcus sp. isolado RHA1 (fcb) em turfa comercial e solo contaminado com PCB
Keywords in Portuguese
bactéria recombinante
bifenil policlorado
biodegradação
sedimento
seqüênciamento genético
toxicologia ambiental
turfa
Abstract in Portuguese
O grupo de organoclorados, Bifenilas Policloradas (PCBs) é de difÃcil degradação e persistente no meio ambiente, tendo sido associado a diversos problemas nos organismos devido ao potencial toxicológico. Biodegradação constitui uma ferramenta eficaz e barata para remoção destes contaminantes do ambiente. O isolado RHA1 (fcb) de Rhodococcus sp. foi geneticamente construÃdo com a introdução do operon de degradação hidrolÃtica de 4-clorobenzoato (fcb) para evitar a formação de produtos tóxicos durante a degradação de ácidos clorobenzóicos. Com o intuito de se obter informações sobre o processo adaptativo do recombinante Rhodococcus sp. isolado RHA1 (fcb) em substratos contendo PCBs, foram feitos dois ensaios avaliando-se a sobrevivência e o crescimento deste isolado. Rhodococcus sp. isolado RHA1 (fcb) foi inoculado (104 células.g-1) em substrato turfoso previamente irradiado a 50 KGy, contendo ou não 200 mg.Kg-1 de bifenilo. Em outro ensaio, além do recombinante, as bactérias Escherichia coli e Arthrobacter sp. foram inoculados em sedimento coletado na região do Estuário de Santos, contendo PHAs e PCBs, também irradiado (50 KGy). O crescimento das bactérias em ambos os substratos foi monitorado através de contagem de Unidades Formadoras de Colônias (UFCs). Algumas colônias eram selecionadas aleatoriamente para extração de DNA, detecção do operon fcb através de amplificação por PCR e sequenciamento do gene 16S rRNA. Aumento no número
de UFCs nos tratamentos inoculados com o recombinante foi observado até 150 dias no ensaio
com substrato turfoso e 70 dias na amostra ambiental. Entretanto, houve queda no número de UFCs após os 10 dias nos tratamentos inoculados com E. coli e Arthrobacter sp. Os genes fcbA e fcbB do operon fcb foram detectados nas colônias isoladas dos tratamentos inoculados com o isolado RHA1 (fcb) em ambos os substratos. A análise das seqüências pertencentes às colônias isoladas do tratamento inoculado com o isolado RHA1 (fcb) feita através de BLAST nos sites do NCBI e Ribossomal Database Project, apresentou 99% de identidade com a seqüência do gene ribossomal 16S de Rhodococcus sp. isolado ZC–3 (AM076672.1). Somente as seqüências referentes ao tratamento inoculado com E. coli foram analisadas, as quais apresentaram 99% de identidade com a seqüência do gene ribossomal 16S de E. coli isolado K-12 MG 1655 (U00096.2). Estes resultados sugerem que Rhodococcus sp. isolado RHA1 (fcb) cresce na turfa
irradiada (até 150 dias) na presença e ausência de PCB e nesta amostra de sedimento irradiada (até 70 dias), com aparente estabilidade do operon fcb durante este perÃodo e nestas condições. A possÃvel presença dos genes fcbB e fcbA em bactérias nativas crescidas em meio K1 com ácido 4- clorobenzóico isoladas do sedimento antes da irradiação, sugere a presença de bactérias do local com potencial biodegradador deste composto.
Title in English
Growth and survival of recombinant Rhodococcus sp. isolate RHA1 (fcb) in commercial peat and in PCB contaminated soil
Keywords in English
biodegradation
environmental toxicology
genetic sequence
peat
polychlorinated biphenyl
recombinant bacteria
sediment
Abstract in English
The group of organochlorates Biphenyl Polychlorates (PCBs) is of difficult degradation and persistent in the environment, being associated to several problems in the organisms due to its toxicological potential. The isolate RHA1 (fcb) from Rhodococcus sp. was genetically built with the introduction of the operon of hydrolytic degradation 4-chlorobenzoate (fcb) to avoid the formation of toxic products during the degradation of chlorobenzoic acids. In order to obtain information about the adaptative process of the recombinant Rhodococcus sp. isolate RHA1 (fcb)
in substrates containing PCBs, two essays were made evaluating the survival and growth of this isolate. Rhodococcus sp. isolate RHA1 (fcb) was inoculated (104 cells.g-1) in peat substrate previously irradiated with 50 kGy, with and without 200 mg.kg-1 of biphenyl. In another essay, besides of the recombinant, the bacteria Escherichia coli and Arthrobacter sp. were inoculated in soil, also irradiated (50 kGy), from the Estuário de Santos region containing PHAs and PCBs. The growth of the bacteria in both substrates was monitorated counting the Colony Forming Units (CFUs). Some colonies were selected randomly for DNA extraction, fcb operon detection
through PCR, and sequencing of the 16S rRNA gene. Rising in the number of CFUs in the recombinant inoculated treatments was observed until 150 days in the essay with peat substrate, and until 70 days in the environmental sample. Nonetheless, there was a reduction in the number of CFUs after 10 days in the treatment inoculated with E. coli and Arthrobacter sp. The genes fcbA and fcbB from the operon fcb were detected in the isolated colonies of the treatments inoculated with the isolate RHA1 (fcb) in both substrates. The analysis of the sequences belonging to the colonies isolated from the treatment inoculated with the isolate RHA1 (fcb) through BLAST in the NCBI and Ribosomal Database Project sites showed 99% identity with the sequence of the gene 16S ribosomal from Rhodococcus sp. isolate ZC-3 (AM076672.1). Only the sequences referring to the treatment inoculated with E. coli were analyzed, which showed 99% identity with the sequence of the 16S ribosomal gene from E. coli isolate K-12 MG 1655 (U00096.2). These results suggest that Rhodococcus sp. isolate RHA1 (fcb) grows in the peat irradiated (until 150 days), in the presence and absence of PCB and in this irradiated sediment
sample (until 70 days), with apparent stability of the fcb operon during this period and in these conditions. The possible presence of the fcbA and fcbB genes in native bacteria grown in K1 medium with 4-chlorobenzoate acid isolated from sediment before irradiation suggests the presence of native bacteria with biodegradation potential of this compound.
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Publishing Date
2006-01-20