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Doctoral Thesis
DOI
https://doi.org/10.11606/T.87.2011.tde-14092011-115029
Document
Author
Full name
Cesar Augusto do Nascimento
Institute/School/College
Knowledge Area
Date of Defense
Published
São Paulo, 2011
Supervisor
Committee
Botosso, Viviane Fongaro (President)
Jorge, Soraia Attie Calil
Mello, Isabel Maria Vicente Guedes de Carvalho
Oliveira, Maria Isabel de
Richtzenhain, Leonardo José
Title in Portuguese
Variabilidade genética da proteína G do HRSV de amostras com o genótipo BA.
Keywords in Portuguese
Evolução fenotípica
Genes virais
Genótipos
Sequenciamento genético
Variação genética
Abstract in Portuguese
Para estudar a epidemiologia e evolução do novo genótipo HRSVB denominado BA, caracterizado pela duplicação de 60 nt na proteína G, analisamos 4274 amostras clínicas coletadas de crianças hospitalizadas no Hospital Universitário/USP e Hospital da Santa Casa de Misericórdia, cidade de São Paulo entre os anos de 2001 e 2009. As amostras foram submetidas a RT-PCR seguido do sequenciamento da região G2 do gene G. A duplicação de 60 nt foi detectada em 104 (28.3%) das 367 amostras analisadas. De 2001 a 2004 a circulação do genótipo BA foi baixa, seguido de 85.4% (2005), 57.6% (2006), sem circulação (2007), 10% (2008) e 75% (2009) do total de amostras sequenciadas. As sequências foram comparadas com outras BA de diversos países do mundo. A análise filogenética preliminar dividiu as amostras brasileiras em 5 grupos (BA-I, BAII, BAIII, BAIV e BAVI), sendo que a maioria das amostras de 2005 a 2009 agruparam juntas na linhagem BA-IV, estabelecendo um grupo temporal e geográfico.
Title in English
Genetic variability of the G protein of HRSV samples with BA genotype.
Keywords in English
Genetic sequencing
Genetic variation
Genotypes
Phenotypic evolution
Viral genes
Abstract in English
In order to study the epidemiology and evolution of the new genotype of HRSVB named BA characterized with a 60-nt duplication in the G protein we analyzed 4274 clinical samples collected from children hospitalized in University Hospital/USP and Santa Casa de Misericórdia Hospital, in São Paulo city, during 2001 to 2009. The samples were subject to RT-PCR followed by sequencing of the G2 region of the G gene. The 60 nt-duplication were detected in 104 (28.3%) of 367 sequencing samples. From 2001 to 2004 the circulation of the BA genotype was low, followed by 85.4% (2005), 57.6% (2006), no circulation (2007), 10% (2008) and 75% (2009) of total sequencing samples. Sequences were compared with G sequences with the 60 nt-duplication globally sampled. Preliminary phylogenetic analysis divided Brazilian samples into five clusters (BA-I, BAII, BAIII and BAVI and BAIV), and almost all samples from 2005 to 2009 were clustered together in BA-IV lineage, establishing temporal and geographical cluster.
 
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Publishing Date
2011-09-22
 
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