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Doctoral Thesis
DOI
https://doi.org/10.11606/T.46.2018.tde-10052018-143753
Document
Author
Full name
Ricardo de Marco
E-mail
Institute/School/College
Knowledge Area
Date of Defense
Published
São Paulo, 2003
Supervisor
Committee
Verjovski-Almeida, Sergio (President)
Degrave, Wim Maurits Sylvain
Dias Neto, Emmanuel
El Dorry, Hamza Fahmi Ali
Obando, Hernando Antonio Del Portillo
Title in Portuguese
Construção e caracterização de mini-bibliotecas de EST geradas com RT-PCR de baixa estringencia e clonagem de uma apirase de Schistosoma mansoni
Keywords in Portuguese
Biologia molecular
Bioquímica
Clonagem
Dados de sequência molecular
Schistosoma (Estudo)
Schistosoma mansoni
Abstract in Portuguese
Este trabalho demonstrou a construção de minibibliotecas de "Expressed Sequence Tags" (EST) com o uso de RT-PCR de baixa estringencia e "primer" consenso-degenerado. Através do estudo de parâmetros críticos como concentração de sais, temperatura e velocidade de ciclagem, composição dos "primers" e qualidade do RNA mensageiro, foi possível padronizar um protocolo. Tal protocolo permitiu um aumento do numero de seqüências por minibiblioteca em relação a protocolos similares existentes na literatura (Dias neto et al., 1997 e 2000) sem perda de características desejáveis como amplificação preferencial do centro dos genes e nomalização das mensagens. As seqüências produzidas levaram a um significativo aumento das seqüências de EST de S. mansoni disponíveis publicamente e permitiu a detecção da existência de novos fragmentos de genes expressos na fase adulta do parasita. Neste trabalho também clonamos uma apirase de S. mansoni cuja a seqüência não havia sido descrita anteriormente. O gene possui cerca de 2,7 mil pares de bases e codifica para uma proteína de 544 aminoácidos. Esta foi expressa em sistema heterologo e utilizada para obtenção de anticorpos policlonais contra esta proteína. Utilizando estes anticorpos foi possível detectar a proteína no tegumento do parasita.
Title in English
Construction and characterization of EST mini-libraries generated with low stringency RT-PCR and Cloning of a Schistosoma mansoni Apirase
Keywords in English
Biochemistry
Cloning
Molecular biology
Molecular sequence data
Schistosoma (Study)
Schistosoma mansoni
Abstract in English
This work demonstrates the construction of EST minilibraries employing low stringency RT-PCR and consensus-degenerate primers. Through the study of critical parameters such as salt concentration, cycling temperature and ramp speed, composition of primers and quality of messenger RNA a standard protocol was obtained. Such protocol allowed an increase in the number of sequences per minilibrary in relation to similar protocols in the literature (Dias Neto et al., 1997 and 2000) without no loss in desirable characteristics such as preferential amplification of the central portion of messages and normalization of messages. The sequences produced allowed a significant increase in the publicly available EST sequences of S. mansoni and permitted discovery of new gene fragments expressed in adult stage of the life cycle of the parasite. In this work we also cloned an apyrase of S. mansoni whose sequence had never been described previously. The gene has about 2.7 kilobases and codes for a protein of 544 aminoacids. This protein was expressed in a heterologous system and was used for production of a polyclonal antibody. This antibody was used for detection of this protein in the tegument of the parasite.
 
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Publishing Date
2018-05-10
 
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